an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

N-acetyl-D-muramate 6-phosphate

glutathione disulfide

dialurate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(R)-1-amino-2-propanol O-2-phosphate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

histidinal

D-erythro-imidazole-glycerol-phosphate

formamide

4-oxoglutaramate

1-piperideine 6-carboxylate

aminoacetone

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

N⁵-carboxyaminoimidazole ribonucleotide

H₂O

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

phosphoenolpyruvate

CO₂

oxalosuccinate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

3-deoxy-D-glycero-2,5-hexodiulosonate

hydrogen peroxide

3-methyl-2-oxobutanoate

(S)-dihydroorotate

quinolinate

β-nicotinate D-ribonucleotide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

3-dehydroshikimate

shikimate

oxaloacetate

acetyl phosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

(R)-mandelate

(S)-mandelate

2-succinylbenzoate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

formate

4-amino-4-deoxychorismate

glycolate

prenyl diphosphate

histidinol

L-histidinol phosphate

L-selenocystathionine

thiamine diphosphate

thiamine phosphate

xanthine

lipid IV_A

lipid A disaccharide (E. coli)

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

(S)-2-amino-6-oxohexanoate

autoinducer 2

S-ribosyl-L-homocysteine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

4-guanidinobutyramide

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-prenylphlorisobutyrophenone

all-trans-13,14-dihydroretinol

β-D-ribosylnicotinate

1-deoxy-L-glycero-tetrulose 4-phosphate

lipid X

glycerone phosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

α-ribazole 5'-phosphate

α-ribazole

5,6-dimethylbenzimidazole

α-D-glucosamine 1-phosphate

2-maleylacetate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

hydroxypyruvate

8-amino-7-oxononanoate

pimeloyl-CoA

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

5-amino-6-(D-ribitylamino)uracil

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

N-(5-phosphoribosyl)-anthranilate

2-C-methyl-D-erythritol 4-phosphate

urocanate

4-imidazolone-5-propanoate

imidazole acetol-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

(lipoyl)adenylate

DNA without lesion

3-phosphooxypyruvate

carboxyphosphate

carbamoyl phosphate

coproporphyrinogen III

3-deoxy-α-D-manno-2-octulosonate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

orotidine 5'-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4'-phosphopantetheine

nicotinate adenine dinucleotide

1,4-dihydroxy-2-naphthoate

α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosamine

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

(R)-4'-phosphopantothenoyl-L-cysteine

1,6-anhydro-N-acetyl-β-muramate

2-dehydropantoate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-threonine

L-methionine

glycine

L-aspartate

L-asparagine

L-glutamine

L-glutamate

L-phenylalanine

L-valine

L-leucine

L-isoleucine

L-arginine

L-serine

L-alanine

L-histidine

L-tyrosine

L-lysine

L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homocysteine

3-sulfino-L-alanine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-saccharopine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-isoglutamine

L-cystathionine

D-alanine

D-glutamate

β-alanine

4-aminobenzoate

acetate

orotate

(R)-pantoate

4-deoxy-L-threo-hex-4-enopyranuronate

pristanate

octanoate

palmitate

stearate

laurate

7-hydroxylaurate

decanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

(15Z)-tetracosenoate

oleate

phytenate

linoleate

α-linolenate

(R)-lactate

(R)-glycerate

propanoate

pyruvate

2-oxoglutarate

2-oxobutanoate

3-phenyl-2-oxopropanoate

D-threo-isocitrate

chorismate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phlorisovalerophenone

all-trans-retinol

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

4-prenylphlorisovalerophenone

deoxycohumulone

deoxyhumulone

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-mannosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

β-D-galactopyranose

α-D-galactopyranose

α-D-xylopyranose

β-D-glucopyranose

α-D-glucopyranose

α-D-ribofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

isoprimeverose

maltopentaose

maltohexaose

maltotetraose

maltoheptaose

maltotriose

acetaldehyde

menadione

caldariellaquinone

urate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

3-demethylubiquinol-10

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

ubiquinol-10

guanine

adenine

AMP

XMP

IMP

GMP

ATP

GTP

ADP

GDP

dGDP

dADP

dGTP

dATP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

7,8-dihydrolumazine

tetrahydromethanopterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

FMNH₂

FMN

riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

preQ₁

isoguanine

UDP

CTP

dUMP

dCMP

dTMP

dCDP

CDP

dCTP

UTP

dUTP

cytidine-3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 3'-monophosphate

uridine 2'3'-cyclic monophosphate

dTTP

dTDP

UMP

CMP

cytidine

uridine

2'-deoxyuridine

thymidine

2'-deoxycytidine

adenosylcobalamin

precorrin-2

precorrin-1

coenzyme A

(R)-lipoate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-dGTP

5'-deoxyadenosine

adenylo-succinate

cyclic-AMP

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

ppGpp

pppGpp

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

nicotinate

thiamine

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

cob(I)alamin

isobutanoyl-CoA

acetyl-CoA

succinyl-CoA

3'-dephospho-CoA

α-linolenoyl-CoA

linoleoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

decanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

phytenoyl-CoA

trans-dienelactone

cis-dienelactone

glutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-aminoprop-2-enoate

2-iminopropanoate

hydroxyl radical

superoxide

OH^-

hydrogensulfite

sulfite

hydrogencarbonate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

Zn²⁺

Mg²⁺

ammonium

H⁺

2-chloroacetate

preQ₀

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

DNA with lesion

α-D-glucosamine 6-phosphate

ω-saturated C55 dolichol phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

2-iminosuccinate

oxygen

protoporphyrinogen IX

Mg-protoporphyrin

protoporphyrin IX

uroporphyrinogen-III

protoheme

cob(II)yrinate a,c-diamide

adenosylcobyrate

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate